The 31 common GO terms of the PCTFP (Msn4-Msn2)

GO ID GO Level GO Term GO Aspect GO Term Definition
GO:0061434 6 regulation of replicative cell aging by regulation of transcription from RNA polymerase II promoter in response to caloric restriction P Any process that modulates the frequency, rate or extent of replicative cell aging through a mechanism that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a caloric restriction stimulus.
GO:0061410 6 positive regulation of transcription from RNA polymerase II promoter in response to ethanol P Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an ethanol stimulus.
GO:0061411 6 positive regulation of transcription from RNA polymerase II promoter in response to cold P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GO:0061412 7 positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of amino acids.
GO:0003677 5 DNA binding F Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005737 4 cytoplasm C All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0043565 6 sequence-specific DNA binding F Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005634 5 nucleus C A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000987 9 core promoter proximal region sequence-specific DNA binding F Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to the core promoter. The transcribed region might be described as a gene, cistron, or operon.
GO:0046872 5 metal ion binding F Interacting selectively and non-covalently with any metal ion.
GO:0000982 5 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding F Interacting selectively and non-covalently with a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to modulate transcription by RNAP II.
GO:0003676 4 nucleic acid binding F Interacting selectively and non-covalently with any nucleic acid.
GO:0061409 7 positive regulation of transcription from RNA polymerase II promoter in response to freezing P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a freezing stimulus, temperatures below 0 degrees Celsius.
GO:0061408 6 positive regulation of transcription from RNA polymerase II promoter in response to heat stress P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0061403 6 positive regulation of transcription from RNA polymerase II promoter in response to nitrosative stress P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.
GO:0061402 7 positive regulation of transcription from RNA polymerase II promoter in response to acidic pH P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.
GO:0061401 7 positive regulation of transcription from RNA polymerase II promoter in response to a hypotonic environment P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
GO:0061407 7 positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrogen peroxide (H2O2) stimulus.
GO:0061406 7 positive regulation of transcription from RNA polymerase II promoter in response to glucose starvation P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of glucose.
GO:0061405 6 positive regulation of transcription from RNA polymerase II promoter in response to hydrostatic pressure P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
GO:0061404 8 positive regulation of transcription from RNA polymerase II promoter in response to increased salt P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
GO:0061422 7 positive regulation of transcription from RNA polymerase II promoter in response to alkaline pH P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH >7.0.
GO:0061395 6 positive regulation of transcription from RNA polymerase II promoter in response to arsenic-containing substance P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
GO:0001324 6 age-dependent response to oxidative stress involved in chronological cell aging P Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) occurring in non-dividing cells as they age as a result of oxidative stress, where the change varies according to the age of the cell or organism.
GO:0001302 5 replicative cell aging P The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division.
GO:0006338 7 chromatin remodeling P Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
GO:0005829 5 cytosol C The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
GO:0097236 8 positive regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation P Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of deprivation of zinc ions.
GO:0006355 6 regulation of transcription, DNA-templated P Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0045944 7 positive regulation of transcription from RNA polymerase II promoter P Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0006351 6 transcription, DNA-templated P The cellular synthesis of RNA on a template of DNA.