The 56 papers which experimentally study the biological roles of both TFs of the PCTFP (Mig1-Msn2)
Neely LA and Hoffman CS (2000) Protein kinase A and mitogen-activated protein kinase pathways antagonistically regulate fission yeast fbp1 transcription by employing different modes of action at two upstream activation sites. Mol Cell Biol 20(17):6426-34
Unnikrishnan I, et al. (2003) Multiple positive and negative elements involved in the regulation of expression of GSY1 in Saccharomyces cerevisiae. J Biol Chem 278(29):26450-7
Lin Y, et al. (2015) Combinatorial gene regulation by modulation of relative pulse timing. Nature 527(7576):54-8
Zheng J, et al. (2010) Epistatic relationships reveal the functional organization of yeast transcription factors. Mol Syst Biol 6():420
Ruetenik A and Barrientos A (2015) Dietary restriction, mitochondrial function and aging: from yeast to humans. Biochim Biophys Acta 1847(11):1434-47
Bohm S, et al. (1997) Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 25(12):2464-9
Yu H and Gerstein M (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Rojas M, et al. (2008) Selective inhibition of yeast regulons by daunorubicin: a transcriptome-wide analysis. BMC Genomics 9:358
Broach JR (2012) Nutritional control of growth and development in yeast. Genetics 192(1):73-105
Jothi R, et al. (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Yu T and Li KC (2005) Inference of transcriptional regulatory network by two-stage constrained space factor analysis. Bioinformatics 21(21):4033-8
Galdieri L, et al. (2010) Transcriptional Regulation in Yeast during Diauxic Shift and Stationary Phase. OMICS 14(6):629-38
Bussereau F, et al. (2004) Zinc finger transcriptional activators of yeasts. FEMS Yeast Res 4(4-5):445-58
Estruch F and Carlson M (1993) Two homologous zinc finger genes identified by multicopy suppression in a SNF1 protein kinase mutant of Saccharomyces cerevisiae. Mol Cell Biol 13(7):3872-81
Wuster A and Babu MM (2010) Transcriptional control of the quorum sensing response in yeast. Mol Biosyst 6(1):124-31
Chua G, et al. (2006) Identifying transcription factor functions and targets by phenotypic activation. Proc Natl Acad Sci U S A 103(32):12045-50
Eckert-Boulet N, et al. (2005) Grr1p is required for transcriptional induction of amino acid permease genes and proper transcriptional regulation of genes in carbon metabolism of Saccharomyces cerevisiae. Curr Genet 47(3):139-49
Bisson LF, et al. (2016) Sugar and Glycerol Transport in Saccharomyces cerevisiae. Adv Exp Med Biol 892():125-68
Gordan R, et al. (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125
Parua PK and Young ET (2014) Binding and transcriptional regulation by 14-3-3 (bmh) proteins requires residues outside of the canonical motif. Eukaryot Cell 13(1):21-30
Bussereau F, et al. (2006) The Kluyveromyces lactis repertoire of transcriptional regulators. FEMS Yeast Res 6(3):325-35
Rodkaer SV and Faergeman NJ (2014) Glucose- and nitrogen sensing and regulatory mechanisms in Saccharomyces cerevisiae. FEMS Yeast Res 14(5):683-96
Castelnuovo M, et al. (2014) Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast. Nucleic Acids Res 42(7):4348-62
Kayikci O and Nielsen J (2015) Glucose repression in Saccharomyces cerevisiae. FEMS Yeast Res 15(6)
Huebert DJ, et al. (2012) Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators. Mol Cell Biol 32(9):1645-53
Cardona F, et al. (2012) Phylogenetic origin and transcriptional regulation at the post-diauxic phase of SPI1, in Saccharomyces cerevisiae. Cell Mol Biol Lett 17(3):393-407
Beskow A and Wright AP (2006) Comparative analysis of regulatory transcription factors in Schizosaccharomyces pombe and budding yeasts. Yeast 23(13):929-35
Middendorf M, et al. (2004) Predicting genetic regulatory response using classification. Bioinformatics 20 Suppl 1():i232-40
Busti S, et al. (2010) Glucose signaling-mediated coordination of cell growth and cell cycle in Saccharomyces cerevisiae. Sensors (Basel) 10(6):6195-240
Zhao Y, et al. (2008) Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae. J Proteome Res 7(3):1315-1325
Simpson CE and Ashe MP (2012) Adaptation to stress in yeast: to translate or not? Biochem Soc Trans 40(4):794-9
Fendt SM, et al. (2010) Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast. Mol Syst Biol 6():432
Slattery MG, et al. (2008) Protein kinase A, TOR, and glucose transport control the response to nutrient repletion in Saccharomyces cerevisiae. Eukaryot Cell 7(2):358-67
Geijer C, et al. (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554
Engelberg D, et al. (2014) Transmembrane signaling in Saccharomyces cerevisiae as a model for signaling in metazoans: state of the art after 25 years. Cell Signal 26(12):2865-78
Gorner W, et al. (1999) Being at the right place at the right time: the role of nuclear transport in dynamic transcriptional regulation in yeast. Biol Chem 380(2):147-50
Yi DG and Huh WK (2015) PKA, PHO and stress response pathways regulate the expression of UDP-glucose pyrophosphorylase through Msn2/4 in budding yeast. FEBS Lett 589(18):2409-16
Alberghina L, et al. (2011) Cell growth and cell cycle in Saccharomyces cerevisiae: basic regulatory design and protein-protein interaction network. Biotechnol Adv 30(1):52-72
Enjalbert B, et al. (2004) Combinatorial control by the protein kinases PKA, PHO85 and SNF1 of transcriptional induction of the Saccharomyces cerevisiae GSY2 gene at the diauxic shift. Mol Genet Genomics 271(6):697-708
Eriksson E, et al. (2010) A microfluidic device for reversible environmental changes around single cells using optical tweezers for cell selection and positioning. Lab Chip 10(5):617-25
Yao Y, et al. (2015) Proteasomes, Sir2, and Hxk2 Form an Interconnected Aging Network That Impinges on the AMPK/Snf1-Regulated Transcriptional Repressor Mig1. PLoS Genet 11(1):e1004968
Miermont A, et al. (2013) Severe osmotic compression triggers a slowdown of intracellular signaling, which can be explained by molecular crowding. Proc Natl Acad Sci U S A 110(14):5725-30
Casamayor A, et al. (2012) The role of the Snf1 kinase in the adaptive response of Saccharomyces cerevisiae to alkaline pH stress. Biochem J 444(1):39-49
Ding S and Wang W (2011) Recipes and mechanisms of cellular reprogramming: a case study on budding yeast Saccharomyces cerevisiae. BMC Syst Biol 5(1):50
van Werven FJ and Amon A (2011) Regulation of entry into gametogenesis. Philos Trans R Soc Lond B Biol Sci 366(1584):3521-31
Luscombe NM, et al. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431(7006):308-12
Ferretti AC, et al. (2012) Nutritional stress in eukaryotic cells: oxidative species and regulation of survival in time of scarceness. Mol Genet Metab 105(2):186-92
Babbitt GA (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Arino J (2010) Integrative Responses to High pH Stress in S. cerevisiae. OMICS 14(5):517-23
Kunitomo H, et al. (2000) A zinc-finger protein, Rst2p, regulates transcription of the fission yeast ste11(+) gene, which encodes a pivotal transcription factor for sexual development. Mol Biol Cell 11(9):3205-17
Conrad M, et al. (2014) Nutrient sensing and signaling in the yeast Saccharomyces cerevisiae. FEMS Microbiol Rev 38(2):254-99
Hong KK and Nielsen J (2013) Adaptively evolved yeast mutants on galactose show trade-offs in carbon utilization on glucose. Metab Eng 16():78-86
Wu J and Trumbly RJ (1998) Multiple regulatory proteins mediate repression and activation by interaction with the yeast Mig1 binding site. Yeast 14(11):985-1000
Ratnakumar S, et al. (2011) Phenomic and transcriptomic analyses reveal that autophagy plays a major role in desiccation tolerance in Saccharomyces cerevisiae. Mol Biosyst 7(1):139-49
Gelade R, et al. (2003) Multi-level response of the yeast genome to glucose. Genome Biol 4(11):233
Dalal CK, et al. (2014) Pulsatile dynamics in the yeast proteome. Curr Biol 24(18):2189-94