| Boorsma A, et al. (2004) Characterization of the transcriptional response to cell wall stress in Saccharomyces cerevisiae. Yeast 21(5):413-27 | 
        
                
            | Zheng J, et al. (2010) Epistatic relationships reveal the functional organization of yeast transcription factors. Mol Syst Biol 6():420 | 
        
                
            | Mager WH and Siderius M (2002) Novel insights into the osmotic stress response of yeast. FEMS Yeast Res 2(3):251-7 | 
        
                
            | Capaldi AP, et al. (2008) Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 40(11):1300-6 | 
        
                
            | Saxena A and Sitaraman R (2014) Osmoregulation and the human mycobiome. Front Microbiol 5():167 | 
        
                
            | Kresnowati MT, et al. (2006) When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. Mol Syst Biol 2():49 | 
        
                
            | Saito H (2010) Regulation of cross-talk in yeast MAPK signaling pathways. Curr Opin Microbiol 13(6):677-83 | 
        
                
            | Mody A, et al. (2009) Modularity of MAP kinases allows deformation of their signalling pathways. Nat Cell Biol 11(4):484-91 | 
        
                
            | Soufi B, et al. (2009) Global analysis of the yeast osmotic stress response by quantitative proteomics. Mol Biosyst 5(11):1337-46 | 
        
                
            | Nevitt T, et al. (2004) YAP4 gene expression is induced in response to several forms of stress in Saccharomyces cerevisiae. Yeast 21(16):1365-74 | 
        
                
            | Gordan R, et al. (2011) Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol 12(12):R125 | 
        
                
            | Bussereau F, et al. (2006) The Kluyveromyces lactis repertoire of transcriptional regulators. FEMS Yeast Res 6(3):325-35 | 
        
                
            | Pelet S, et al. (2011) Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science 332(6030):732-5 | 
        
                
            | Miller C, et al. (2011) Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol 7():458 | 
        
                
            | Ni L, et al. (2009) Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23(11):1351-63 | 
        
                
            | Murray DB, et al. (2011) Redox regulation in respiring Saccharomyces cerevisiae. Biochim Biophys Acta 1810(10):945-58 | 
        
                
            | Lai WK and Buck MJ (2013) An integrative approach to understanding the combinatorial histone code at functional elements. Bioinformatics 29(18):2231-7 | 
        
                
            | Miermont A, et al. (2011) The Dynamical Systems Properties of the HOG Signaling Cascade. J Signal Transduct 2011():930940 | 
        
                
            | Rodriguez-Pena JM, et al. (2010) The high-osmolarity glycerol (HOG) and cell wall integrity (CWI) signalling pathways interplay: a yeast dialogue between MAPK routes. Yeast 27(8):495-502 | 
        
                
            | Beskow A and Wright AP (2006) Comparative analysis of regulatory transcription factors in Schizosaccharomyces pombe and budding yeasts. Yeast 23(13):929-35 | 
        
                
            | Guet D, et al. (2015) Combining Spinach-tagged RNA and gene localization to image gene expression in live yeast. Nat Commun 6():8882 | 
        
                
            | Thorne TW, et al. (2011) Prediction of putative protein interactions through evolutionary analysis of osmotic stress response in the model yeast Saccharomyces cerevisae. Fungal Genet Biol 48(5):504-11 | 
        
                
            | de Nadal E and Posas F (2010) Multilayered control of gene expression by stress-activated protein kinases. EMBO J 29(1):4-13 | 
        
                
            | Zhao Y, et al. (2008) Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae. J Proteome Res 7(3):1315-1325 | 
        
                
            | Hong SY, et al. (2013) Oxidative stress-related transcription factors in the regulation of secondary metabolism. Toxins (Basel) 5(4):683-702 | 
        
                
            | Hamel LP, et al. (2012) Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers. Plant Cell 24(4):1327-51 | 
        
                
            | Chang M, et al. (2013) Kdx1 regulates RCK1 gene expression by interacting with Rlm1 in Saccharomyces cerevisiae. Biochem Biophys Res Commun 435(3):350-5 | 
        
                
            | Jothi R, et al. (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294 | 
        
                
            | Zhao XQ and Bai F (2012) Zinc and yeast stress tolerance: micronutrient plays a big role. J Biotechnol 158(4):176-83 | 
        
                
            | Fordyce PM, et al. (2010) De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol 28(9):970-5 | 
        
                
            | Martinez-Montanes F, et al. (2010) Toward a genomic view of the gene expression program regulated by osmostress in yeast. OMICS 14(6):619-27 | 
        
                
            | Krantz M, et al. (2009) Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway. Mol Syst Biol 5:281 | 
        
                
            | Cardona F, et al. (2012) Phylogenetic origin and transcriptional regulation at the post-diauxic phase of SPI1, in Saccharomyces cerevisiae. Cell Mol Biol Lett 17(3):393-407 | 
        
                
            | Yu H and Gerstein M (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31 | 
        
                
            | Proft M, et al. (2005) Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae. Eukaryot Cell 4(8):1343-52 | 
        
                
            | de Nadal E, et al. (2002) Dealing with osmostress through MAP kinase activation. EMBO Rep 3(8):735-40 | 
        
                
            | Romero-Santacreu L, et al. (2010) The bidirectional cytomegalovirus immediate/early promoter is regulated by Hog1 and the stress transcription factors Sko1 and Hot1 in yeast. Mol Genet Genomics 283(5):511-8 | 
        
                
            | Wu X, et al. (2010) The evolutionary rate variation among genes of HOG-signaling pathway in yeast genomes. Biol Direct 5():46 | 
        
                
            | Krantz M, et al. (2006) Comparative genomics of the HOG-signalling system in fungi. Curr Genet 49(3):137-51 | 
        
                
            | Wang L, et al. (2012) Integrating phosphorylation network with transcriptional network reveals novel functional relationships. PLoS One 7(3):e33160 | 
        
                
            | Siddharthan R, et al. (2005) PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. PLoS Comput Biol 1(7):e67 | 
        
                
            | Babbitt GA (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8 | 
        
                
            | Regot S, et al. (2013) The Hog1 Stress-activated Protein Kinase Targets Nucleoporins to Control mRNA Export upon Stress. J Biol Chem 288(24):17384-98 | 
        
                
            | Kanshin E, et al. (2015) A Cell-Signaling Network Temporally Resolves Specific versus Promiscuous Phosphorylation. Cell Rep 10(7):1202-14 | 
        
                
            | Dakal TC, et al. (2014) Adaptive response and tolerance to sugar and salt stress in the food yeast Zygosaccharomyces rouxii. Int J Food Microbiol 185C():140-157 | 
        
                
            | Ratnakumar S, et al. (2011) Phenomic and transcriptomic analyses reveal that autophagy plays a major role in desiccation tolerance in Saccharomyces cerevisiae. Mol Biosyst 7(1):139-49 |