| Smith JS, et al. (1999) A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors. Mol Cell Biol 19(4):3184-97 | 
        
                
            | McCord RP, et al. (2007) Inferring condition-specific transcription factor function from DNA binding and gene expression data. Mol Syst Biol 3():100 | 
        
                
            | Santangelo GM (2006) Glucose signaling in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 70(1):253-82 | 
        
                
            | Shah AN, et al. (2011) Deletion of a subgroup of ribosome-related genes minimizes hypoxia-induced changes and confers hypoxia tolerance. Physiol Genomics 43(14):855-72 | 
        
                
            | Grunstein M and Gasser SM (2013) Epigenetics in Saccharomyces cerevisiae. Cold Spring Harb Perspect Biol 5(7) | 
        
                
            | Zanton SJ and Pugh BF (2006) Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock. Genes Dev 20(16):2250-65 | 
        
                
            | Fujiwara D, et al. (1999) Molecular mechanism of the multiple regulation of the Saccharomyces cerevisiae ATF1 gene encoding alcohol acetyltransferase. Yeast 15(12):1183-97 | 
        
                
            | Gossett AJ and Lieb JD (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8(6):e1002771 | 
        
                
            | Yu H and Gerstein M (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31 | 
        
                
            | Roth SY (1995) Chromatin-mediated transcriptional repression in yeast. Curr Opin Genet Dev 5(2):168-73 | 
        
                
            | Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 | 
        
                
            | Wu WS and Lai FJ (2015) Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast. BMC Genomics 16 Suppl 12():S10 | 
        
                
            | Choi JK and Kim YJ (2008) Epigenetic regulation and the variability of gene expression. Nat Genet 40(2):141-7 | 
        
                
            | Engelberg D, et al. (2014) Transmembrane signaling in Saccharomyces cerevisiae as a model for signaling in metazoans: state of the art after 25 years. Cell Signal 26(12):2865-78 | 
        
                
            | Denison C, et al. (2005) A proteomic strategy for gaining insights into protein sumoylation in yeast. Mol Cell Proteomics 4(3):246-54 | 
        
                
            | On T, et al. (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89 | 
        
                
            | Biswas S, et al. (2007) Environmental Sensing and Signal Transduction Pathways Regulating Morphopathogenic Determinants of Candida albicans. Microbiol Mol Biol Rev 71(2):348-76 | 
        
                
            | Buck MJ and Lieb JD (2006) A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nat Genet 38(12):1446-51 |