The 44 papers which experimentally study the biological roles of both TFs of the PCTFP (Swi5-Ash1)
Zhang Q, et al. (2013) Stochastic expression and epigenetic memory at the yeast HO promoter. Proc Natl Acad Sci U S A 110(34):14012-7
Cantone I, et al. (2009) A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. Cell 137(1):172-81
Wu WS and Li WH (2008) Systematic identification of yeast cell cycle transcription factors using multiple data sources. BMC Bioinformatics 9:522
Pan X and Heitman J (2000) Sok2 regulates yeast pseudohyphal differentiation via a transcription factor cascade that regulates cell-cell adhesion. Mol Cell Biol 20(22):8364-72
Voth WP, et al. (2007) Forkhead proteins control the outcome of transcription factor binding by antiactivation. EMBO J 26(20):4324-34
Pizzinga M and Ashe MP (2014) Yeast mRNA localization: protein asymmetry, organelle localization and response to stress. Biochem Soc Trans 42(4):1256-60
Bristow SL, et al. (2014) Cell cycle-regulated transcription: effectively using a genomics toolbox. Methods Mol Biol 1170():3-27
Yalamanchili HK, et al. (2014) DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment. Bioinformatics 30(3):377-83
Parnell EJ, et al. (2014) The Rts1 regulatory subunit of PP2A phosphatase controls expression of the HO endonuclease via localization of the Ace2 transcription factor. J Biol Chem 289(51):35431-7
Koivomagi M, et al. (2013) Multisite phosphorylation networks as signal processors for Cdk1. Nat Struct Mol Biol 20(12):1415-24
Takahata S, et al. (2011) Repressive chromatin affects factor binding at yeast HO (homothallic switching) promoter. J Biol Chem 286(40):34809-19
Takahata S, et al. (2009) FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter. Mol Cell 34(4):405-15
di Bernardo D, et al. (2012) Predicting synthetic gene networks. Methods Mol Biol 813():57-81
McBride HJ, et al. (1999) Distinct regions of the Swi5 and Ace2 transcription factors are required for specific gene activation. J Biol Chem 274(30):21029-36
Cocklin R, et al. (2011) New insight into the role of the Cdc34 ubiquitin-conjugating enzyme in cell cycle regulation via Ace2 and Sic1. Genetics 187(3):701-15
Beskow A and Wright AP (2006) Comparative analysis of regulatory transcription factors in Schizosaccharomyces pombe and budding yeasts. Yeast 23(13):929-35
Marucci L, et al. (2011) Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast. J Math Biol 62(5):685-706
Lai WK and Buck MJ (2013) An integrative approach to understanding the combinatorial histone code at functional elements. Bioinformatics 29(18):2231-7
Cosma MP, et al. (1999) Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter. Cell 97(3):299-311
Chang EJ, et al. (2007) Prediction of cyclin-dependent kinase phosphorylation substrates. PLoS One 2(7):e656
Vinh NX, et al. (2012) Issues impacting genetic network reverse engineering algorithm validation using small networks. Biochim Biophys Acta 1824(12):1434-41
Zhao Y, et al. (2008) Development of a Novel Oligonucleotide Array-Based Transcription Factor Assay Platform for Genome-Wide Active Transcription Factor Profiling in Saccharomyces cerevisiae. J Proteome Res 7(3):1315-1325
Haber JE (2012) Mating-Type Genes and MAT Switching in Saccharomyces cerevisiae. Genetics 191(1):33-64
Zheng J, et al. (2010) Epistatic relationships reveal the functional organization of yeast transcription factors. Mol Syst Biol 6():420
McInerny CJ (2011) Cell cycle regulated gene expression in yeasts. Adv Genet 73():51-85
Jothi R, et al. (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294
Moses AM, et al. (2007) Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. Genome Biol 8(2):R23
Klarner H, et al. (2012) Time series dependent analysis of unparametrized Thomas networks. IEEE/ACM Trans Comput Biol Bioinform 9(5):1338-51
Breeden LL (2003) Periodic transcription: a cycle within a cycle. Curr Biol 13(1):R31-8
Ubersax JA, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425(6960):859-64
Stillman DJ (2013) Dancing the cell cycle two-step: regulation of yeast G1-cell-cycle genes by chromatin structure. Trends Biochem Sci 38(9):467-75
Wloka C and Bi E (2012) Mechanisms of cytokinesis in budding yeast. Cytoskeleton (Hoboken) 69(10):710-26
Yu H and Gerstein M (2006) Genomic analysis of the hierarchical structure of regulatory networks. Proc Natl Acad Sci U S A 103(40):14724-31
Workman CT, et al. (2006) A systems approach to mapping DNA damage response pathways. Science 312(5776):1054-9
Di Talia S, et al. (2009) Daughter-specific transcription factors regulate cell size control in budding yeast. PLoS Biol 7(10):e1000221
Marucci L, et al. (2009) How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch. PLoS One 4(12):e8083
Ocone A, et al. (2013) Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics. Bioinformatics 29(7):910-6
Amon A (1996) Mother and daughter are doing fine: asymmetric cell division in yeast. Cell 84(5):651-4
Babbitt GA (2010) Relaxed selection against accidental binding of transcription factors with conserved chromatin contexts. Gene 466(1-2):43-8
Krebs A and Tora L (2009) Keys to open chromatin for transcription activation: FACT and Asf1. Mol Cell 34(4):397-9
Mark KG, et al. (2014) Ubiquitin ligase trapping identifies an SCF(Saf1) pathway targeting unprocessed vacuolar/lysosomal proteins. Mol Cell 53(1):148-61
Chen H, et al. (2014) Highly sensitive inference of time-delayed gene regulation by network deconvolution. BMC Syst Biol 8 Suppl 4():S6
Mitra D, et al. (2006) SWI/SNF binding to the HO promoter requires histone acetylation and stimulates TATA-binding protein recruitment. Mol Cell Biol 26(11):4095-110
Simon I, et al. (2001) Serial regulation of transcriptional regulators in the yeast cell cycle. Cell 106(6):697-708