a.
國際會議
1. Wu
WS,
Wang CH, Chiu
MC, Chao CC*
(2002 July):
Stability
analysis of the
Turbo decoding
algorithm
using
Max-Log-MAP.
In
Proceedings of
IEEE
International
Symposium on
Information
Theory (ISIT
2002):
Lausanne,
Switzerland.
(Oral)
2. Chen
BS*, Wu WS
(2006 Oct.):
Robust filtering
circuit design
for gene
networks under
intrinsic and
extrinsic
molecular noises.
In
IEEE
International
Conference on
Systems, Man,
and Cybernetics
(SMC 2006):
Taipei, Taiwan.
(Oral)
3. Wu
WS*,
Li WH, Chen BS
(2006 Dec.):
Identifying
regulatory
targets of cell
cycle
transcription
factors using
gene expression
and ChIP-chip
data.
In
IEEE
International
Computer
Symposium (ICS
2006): Taipei,
Taiwan.
(Oral)
4. Chang DTH,
Huang CY, Wu
CY, Wu
WS*
(2010 Oct.):
YPA: an
integrated
repository of
promoter
features in
Saccharomyces
cerevisiae.
In 2010
Midwest Yeast
Meeting:
Evanston, USA.
(Poster)
5. Wu
WS*
(2010 Oct.):
Identification
of yeast cell
cycle
transcription
factors using
dynamic system
model.
In
IEEE Workshop
on Signal
Processing (SiPS
2010):
San Francisco,
USA. (Invited
talk)
-------------------
6. Yang
TH, Chang YH,
Sun RL, Liao PC,
Wu WS*
(2011 Mar.):
A new peak
alignment
algorithm for
LC-MS/MS data.
In RECOMB
Satellite
Conference on
Computational
Proteomics:
San Diego, USA.
(Poster)
7. Hsiao
SL, Yang TH,
Wu WS,
Sun JL, Liao PC*
(2011 Mar.):
A computer
software for
efficient and
confident
identification
of
phosphoproteome
using
phosphatase
treatment and
high mass
accuracy LC-MS
data.
In RECOMB
Satellite
Conference on
Computational
Proteomics:
San Diego, USA.
(Poster)
8. Wu
WS*,
Juang JN (2011
Aug.):
A hybrid
parameter
estimation
algorithm for
S-system model
of gene
regulatory
networks.
In
International
Conference on
Systems Biology
(ICSB):
Mannheim,
Germany.
(Oral)
-------------------
9. Juang JN, Wu WS
(2012 June):
A hybrid
parameter
estimation
algorithm for
S-system model
of gene
regulatory
networks.
In
AAS Jer-Nan Juang
Astrodynamics
Symposium:
Texas, USA.
(Oral)
10.Yang
TH and
Wu WS*
(2012 Aug.):
YTRP: Yeast
transcriptional
regulatory
pathway database.
In
International
Conference on
Systems Biology
(ICSB): Toronto,
Canada.
(Poster)
11.Wu
WS*
and Yang TH
(2012 Aug.):
Identifying
biologically
interpretable
transcription
factor knockout
targets by
jointly
analyzing the
transcription
factor knockout
microarray and
the ChIP-chip
data.
In
International
Conference on
Systems Biology
(ICSB): Toronto,
Canada.
(Poster)
12.Chang
DTH, Li WS, Bai
YH, Wu
WS*
(2012 Dec.):
YGA: identifying
distinct
biological
features between
yeast gene sets.
In The 23rd
International
Conference on
Genome
Informatics
(GIW):
Tainan, Taiwan.
(Oral)
-------------------
13.Wang H, Chiu CC, Wu YC, Wu WS*
(2013 Dec.):
Shrinkage
regression-based methods for
microarray missing value
imputation.
In The 24rd
International
Conference on
Genome
Informatics
(GIW):
Biopolis,
Singapore.
(Oral)
14.Chiu CC, Chan SY, Wang CC, Wu WS*
(2013 Dec.):
Missing value
imputation for microarray data:
a comprehensive comparison study
and a web tool.
In The 24rd
International
Conference on
Genome
Informatics
(GIW):
Biopolis,
Singapore.
(Oral)
15.Yang TH, Wu WS*
(2013 Dec.):
Inferring
functional transcription
factor-gene binding pairs by
integrating transcription factor
binding data with transcription
factor knockout data.
In The 24rd
International
Conference on
Genome
Informatics
(GIW):
Biopolis,
Singapore.
(Oral)
-------------------
16.Chang DTH, Yeh CM, Wei ML,
Wu WS*
(2014 June):
A metric for
computing
regulatory
similarity of
two genes.
In The
11th IEEE
International
Conference on
Control &
Automation
(ICCA):
Taichung,
Taiwan.
(Invited
talk)
17.Chiu CC, Wu WS*
(2014 June):
IMDE: an
easy-to-use web
server for
missing data
estimation.
In The
11th IEEE
International
Conference on
Control &
Automation
(ICCA):
Taichung,
Taiwan.
(Invited
talk)
18.Yang
TH, Chang HT, Hsiao ESL, Sun JL,
Wang CC, Wu HY, Liao PC*, Wu WS*
(2014
July):
iPhos:
toolkit to streamline the
alkaline phosphatase assisted
comprehensive LC-MS
phosphorproteome investigation.
In
The 13th International
Conference on Bioinformatics (InCoB):
Sydney, Australia.
(Oral)
19.Yang
TH, Wang CC, Hung PC, Wu WS*
(2014
July):
cisMEP: an
integrated repository of genomic
epigenetic profiles and cis-regulatory
modules in Drosophila.
In
The 13th International
Conference on Bioinformatics (InCoB):
Sydney, Australia.
(Oral)
20.Hung
PC, Yang TH, Liaw HJ*, Wu WS*
(2014
July):
YNA: an
integrative gene mining platform
for studying chromatin structure
and its regulation in Yeast.
In
The 13th International
Conference on Bioinformatics (InCoB):
Sydney, Australia.
(Oral)
21.Lai
FJ, Chang HT, Huang YM, Wu WS*
(2014
July):
A
comprehensive performance
evaluation on the prediction
results of existing cooperative
transcription factors
identification algorithms.
In
The 13th International
Conference on Bioinformatics (InCoB):
Sydney, Australia.
(Oral)
22.Wu WS,
Wei ML, Yeh CM, DTH Chang*
(2014
Dec.):
A regulatory
similarity measure using the
location information of
transcription factor binding
sites in Saccharomyces
cerevisiae.
In The 24rd
International
Conference on
Genome
Informatics
(GIW):
Tokyo,
Japan.
(Oral)
23.Lai
FJ, Jhu MH, Chiu CC, Huang YM, Wu WS*
(2014
Dec.):
Identifying
cooperative transcription
factors in yeast using multiple
data sources.
In The 24rd
International
Conference on
Genome
Informatics
(GIW):
Tokyo,
Japan.
(Oral)
-------------------
b.
國內會議
1. Wu
WS*,
Lin ZG, Liang H,
Li WH (2009
Oct.):
A study on the
spatial
distribution of
the yeast
transcription
factor binding
sites.
In
Symposium of
Bioinformatics
and Systems
Biology in
Taiwan. (The
Excellent
Poster
Award)
2. Wu WS*
(2010 Nov.):
發展基因調控網路之強健性度量。In
行政院國科會工程處控制學門98年度成果發表會
(Poster)
3.
Yang TH, Chang
YH, Sun RL, Liao
PC,
Wu WS*
(2011 Apr.):
A new peak
alignment
algorithm for
LC-MS/MS data.
In 2011
Translational
Medicine
Conference and
Taiwan
Proteomics
Society Annual
symposium.
(Poster)
4. Hsiao SL,
Yang TH,
Wu WS,
Sun JL, Liao PC*
(2011 Apr.):
A computer
software for
efficient and
confident
identification
of
phosphoproteome
using
phosphatase
treatment and
high mass
accuracy LC-MS
data.
In 2011
Translational
Medicine
Conference and
Taiwan
Proteomics
Society Annual
symposium.
(Poster)
5.
Yang TH, Chang
YH, Sun RL, Liao
PC,
Wu WS*
(2011 July):
A new peak
alignment
algorithm for
LC-MS/MS data.
In The 8th
Taiwan Society
for Mass
Spectrometry
Annual
Conference.
(Poster)
6. Hsiao SL,
Yang TH,
Wu WS,
Sun JL, Liao PC*
(2011 July):
A computer
software for
efficient and
confident
identification
of
phosphoproteome
using
phosphatase
treatment and
high mass
accuracy LC-MS
data.
In The 8th
Taiwan Society
for Mass
Spectrometry
Annual
Conference.
(Poster)
7. Yang
TH,
Wu WS*
(2011 Sept.):
YTRP: Yeast
transcriptional
regulatory
pathway database.
In
Symposium of
Bioinformatics
and Systems
Biology in
Taiwan.
(Poster)
8.
Hsiao SL, Yang
TH, Wu HY, Tseng
WC, Chen YU,
Tsay YG,
Moshkovskii S,
Wu WS*,
Liao PC* (2012
May):
iPhos:
Integrated
software for the
confident
identification
of tyrosine
phosphoproteomes
in
high-throughput
quantitative
proteomics
investigations.
In 2012
Taiwan
Proteomics
Society Annual
Conference:
Disease
Proteomics and
Metabolomics.
(Poster)
9. Chang DTH,
Huang CY, Wu
CY, Wu
WS*
(2012 Sept.):
YPA: an
integrated
repository of
promoter
features in
Saccharomyces
cerevisiae.
In 2012 Yeast
Meeting:
Taipei, Taiwan.
(Oral)
10.Chang
DTH, Li WS, Bai
YH, Wu
WS*
(2012 Sept.):
YGA: identifying
distinct
biological
features between
yeast gene sets.
In 2012 Yeast
Meeting:
Taipei, Taiwan.
(Oral)
11.Wu
WS*
and Yang TH
(2012
Oct.):
Identifying
biologically
interpretable
transcription
factor knockout
targets by
jointly
analyzing the
transcription
factor knockout
microarray and
the ChIP-chip
data.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Oral)
12.Chiu
CC and
Wu WS*
(2012
Oct.):
MissVIA:
a web-based tool
for missing
value imputation.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Oral)
13.Yeh
CM and
Wu WS*
(2012
Oct.):
Identifying
co-regulated
gene
pairs by a
regulatory
similarity
measure.
In
International
Symposium on
Evolutionary Genomics
and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
14.Jhu
MH and
Wu WS*
(2012
Oct.):
Identifying
interactions
between
transcription
factors
using
nucleosome
occupancy
data
and
cis-regulatory
motifs.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
15.Yang
TH and
Wu WS*
(2012
Oct.):
Identifying
functional
transcription
factor-gene
binding
pairs
using ChIP-chip
data and
transcription
factor
knockoutmicroarray
data.
In
International
Symposium on
Evolutionary
Genomics and Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
16.Sun JL, Yang
TH,
Wu WS,
Liao PC* (2013
July):
iPhos:
a tool kit to
streamline the
label-free
LC-MS-based
tyrosine
phosphoproteome
investigation.
In 4th Asia
Oceania Mass
Spectrometry
Conference and
10th Taiwan
Society for Mass Spectrometry
Annual
Conference.
(Poster)
17.Yang
TH and
Wu WS*
(2013
Sept.):
YTRPD: Yeast
transcriptional
regulatory
pathway database.
In 2013 Yeast
Meeting:
Taipei, Taiwan.
(Poster)
18.Hong
PC,
Liao HJ, Wu
WS*
(2013 Sept.):
YNA:
Yeast nucleosome
atlas.
In 2013 Yeast
Meeting:
Taipei, Taiwan.
(Poster)
19.Lai
FJ,
Wu WS*
(2013
Oct.):
A novel method
for functional
transcription
factor binding
sites
identification.
In
Symposium of
Bioinformatics
and Systems
Biology in
Taiwan.
(Poster)
20.Hong
PC,
Liao HJ, Wu
WS*
(2013
Nov.):
YNA:
Yeast nucleosome
atlas.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taichung,
Taiwan.
(Poster)
21.Wang H, Chiu
CC, Wu YC, Wu WS*
(2013 Nov.):
Shrinkage
regression-based methods for
microarray missing value
imputation.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taichung,
Taiwan.
(Poster)
22.Wang CC, Wu WS*
(2013 Nov.):
YSGM: a
web-based tool
for mining yeast
similar genes.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Taichung,
Taiwan.
(Poster)
23.Wei ML, Chang
DTH, Wu WS*
(2013 Nov.):
Probing the
relations among
various types of
biologically-experimented
depiction using
Yeast.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taichung,
Taiwan.
(Poster)
24.Yang TH, Wu WS*
(2013 Nov.):
cisMEP: an
integrated
repository of
genomic
epigenetic
profiles for cis-regulatory
modules in
Drosophila.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taichung,
Taiwan.
(The
Best Student Oral
Presentation
Award)
-------------------
25.Lai
FJ, Jhu MH, Chiu CC, Huang YM, Wu WS*
(2014
Nov.):
Identifying
cooperative transcription
factors in yeast using multiple
data sources.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Tainan,
Taiwan.
(Poster)
26.Lai
FJ, Chang HT, Huang YM, Wu WS*
(2014
Nov.):
A
comprehensive performance
evaluation on the prediction
results of existing cooperative
transcription factors
identification algorithms.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Tainan,
Taiwan.
(Poster)
27.Lai FJ, Chang
HT, Wu WS*
(2014
Nov.):
PCTFPeval: a web
server for
evaluating
predicted
cooperative
transcription
factor pairs in
Yeast.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Tainan,
Taiwan.
(Poster)
-------------------
28.Chiu CC, Wu WS*
(2015
Nov.):
Investigation of
microrna in
mouse macrophage
responses to
lipoposaccharide-stimulation
by combining
gene expression
with microrna-target
information.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Oral)
29.Tu BW, Tseng
DC, Wu WS*
(2015
Nov.):
CSmiRTarget:
condition-specific
miRNA targets
database.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Poster)
30.Wang YC,
Tseng DC, Wu WS*
(2015
Nov.):
HumanIREZone:
human internal
ribosome entry
zone database.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Poster)
31.Jhou MJ, Wu WS*
(2015
Nov.):
MVIAeval: a web
tool for
evaluating the
performance of a
newly developed
microarray
missing value
imputation
algorithm.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Poster)
-------------------
32.Chang YI,
Rathod J, Wu WS*
(2016
Nov.):
YARG: a
repository of
yeast
arsenic-related
genes.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
33.Chang CW,
Liaw HJ, Wu WS*
(2016
Nov.):
A viewer of
human TP53
genome-wide
binding
locations.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
34.Chang CW,
Tseng DC, Wu WS*
(2016
Nov.):
Ribosome
profiling data
viewer.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
35.Hou SW, Wu WS*
(2016
Nov.):
YGFA: yeast gene
feature atlas.
In
International
Symposium on
Evolutionary Genomics and
Bioinformatics:
Kaohsiung,
Taiwan.
(Poster)
-------------------
36.Wu WS*,
Lai FJ, Chu YH
(2017
Dec.):
Detecting
cooperativity
between
transcription
factors based on
functional
coherence and
similarity of
their target
gene sets.
In
生物資訊暨生技產業發展經驗分享研討會:
Tainan,
Taiwan.
(Poster)
37.Wu WS*,
Chiang YH, Chang
JW, Liaw HJ
(2017
Dec.):
p53BLD: a
repository for
the genome-wide
binding loci of
human TP53.
In
生物資訊暨生技產業發展經驗分享研討會:
Tainan,
Taiwan.
(Poster)
38.Wu WS*,
Huang WC
(2017
Dec.):
piSCAN: a web
tool for
predicting and
escaping pirna
target sites in
the input
sequence.
In
生物資訊暨生技產業發展經驗分享研討會:
Tainan,
Taiwan.
(Poster)
39.Wu WS*,
Tu HP
(2017
Dec.):
YHMI: yeast
histone
modification
identifier.
In
生物資訊暨生技產業發展經驗分享研討會:
Tainan,
Taiwan.
(Poster)
40.Wu WS*,
Chen TT
(2017
Dec.):
piRTarDB: piRNA
target database.
In
生物資訊暨生技產業發展經驗分享研討會:
Tainan,
Taiwan.
(Poster)
-------------------
41.Rathod J,
Wu WS,
Dhanani AS, Jean
JS
(2018
Oct.):
Dissecting
molecular
markers of
arsenic-related
genes in
biological
systems:
reconciliation
of existing
information and
fishing out new
genes.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Oral)
42.Wu WS
(2018
Oct.):
Identifying
piRNA targeting
rules in C.
elegans.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Invited
talk)
-------------------
43.Wu WS*,
Liao PC, Wang
PX, Chen TY
(2019 Nov.):
Lung cancer
metabolomics
database.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Chunan,
Taiwan.
(Poster)
44. Ho S, Wu WS,
Tsai WC*
(2019 Nov.):
OrchidBase 3.0:
a database for
orchid genomics
and molecular
biology.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Chunan,
Taiwan.
(Poster)
45. Wu WS*
(2019 Nov.):
A database of
the human TP53
genome-wide
binding loci.
In
International
Automatic
Control
Conference
(CACS: Keelung,
Taiwan.
(Oral)
46. Herianto S,
Rathod J, Shah
P, Chen YZ,
Wu WS,
Liang B, Chen CS*
(2019 Dec.):
Yeast proteome
microarrays
based systematic
analysis of
phosphatidylinositol-5-phosphate
(PI5P)-binding
proteins.
In
Multiomics and
Precision
Medicine Joint
Conference:
Tainan,
Taiwan.
(Poster)
台灣蛋白體學會壁報論文競賽
特優獎
-------------------
47. Wu WS*
(2020 Nov.):
RPiso: a
software tool
for analyzing
and visualizing
ribosome
profiling data
at the isoform
level.
In
International
Automatic
Control
Conference
(CACS: Hsinchu,
Taiwan.
(Oral)
48. Shiue SC,
Lee HC, Wu WS*
(2020 Dec.):
piRNAs
preferentially
bind to the
coding regions
of target mRNAs
to trigger gene
silencing in
C. elegans.
In
International
Symposium on
Evolutionary
Genomics and
Bioinformatics:
Taipei,
Taiwan.
(Poster)
-------------------
49. Wu WS*
(2021 Nov.):
DEIso: A
database of
Differentially
Expressed Genes/Isoforms
in Cancers.
In
International
Automatic
Control
Conference
(CACS): Chiayi,
Taiwan. (Oral)
-------------------